Hormone2cell

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Main workflow functions

hormone2cell.compute_aveExp_by_category(adata)

Integrated workflow for average expression analysis by category (cell / nucleus).

hormone2cell.hormone_strength(ave_all, ...)

End-to-end pipeline to compute hormone strength per cell type and return a long-form, annotated table.

Utility functions

hormone2cell.data.load_hormone_producing_file()

Load a hormone receptor data file (pickle format) packaged within the current module.

hormone2cell.data.load_hormone_receptor_file()

Load a hormone receptor data file (pickle format) packaged within the current module.

hormone2cell.combine_assay(cell, nucleus, ...)

Combine cell and nucleus assay results: - Build Hormone_CT key = Hormone + '___' + Celltype_unique - Mark rows present only in cell / only in nucleus / in both - For pairs present in both, keep the row with the highest Strength - Drop optional columns